 |
Laboratory of Structural Biology & Bioinformatics, Department
of Medical Science, National Tsing Hua University
http://biobug.life.nthu.edu.tw/ |
| Laboratory Specialization |
Structural Biology, Bioinformatics, and Protein Engineering |
| Principal investigator |
Dr. Ping-Chiang Lyu, Professor at the National Tsing Hua University
Department of Medical Science, Institute of Bioinformatics and Structural
Biology, and University Secretary-General. He has previously been
appointed as Director of the Office of Student Affairs and Director
of the Office of General Affairs at National Tsing Hua University. |
| Selected co-authored papers |
| Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang and Ping-Chiang
Lyu* (2007, Aug.). Protein structural similarity search by Ramachandran
codes. BMC Bioinformatics, 8:307. |
 |
 |
| Wei-Cheng Lo, Li-Fen Wang, Yen-Yi Liu, Tian Dai, Jenn-Kang
Hwang* and Ping-Chiang Lyu* (2012, Jun). CPred: a web server
for predicting viable circular permutations in proteins. Nucleic
Acids Research, doi:10.1093/nar/gks529. |
|
|
|
 |
Jenn-Kang Hwang Laboratory, Warshel Institute for Computational
Biology, The Chinese University of Hong Kong, Shenzhen
https://jkhwang.jimdo.com/
|
| Laboratory Specialization |
Molecular Simulation, Structural Biology, Computational Biology,
and Bioinformatics |
| Principal investigator |
Dr. Jenn-Kang Hwang, Professor at Warshel Institute for Computational
Biology, The Chinese University of Hong Kong, Shenzhen. Previous positions
include Chair of National Tsing Hua University Institute of Biotechnology,
Chair of National University Institute of Bioinformatics and Systems
Biology, Dean of National Chiao Tung University College of Life Sciences,
Vice-President of Asia University. |
| Selected co-authored papers |
| Wei-Cheng Lo#, Tian Dai#, Yen-Yi Liu, Li-Fen Wang,
Jenn-Kang Hwang* and Ping-Chiang Lyu* (2012, Feb). Deciphering
the preference and predicting the viability of circular permutations
in proteins. PLoS ONE, 7:e31791. |
|
|
| Chien-Hua Shih, Chih-Min Chang, Yeong-Shin Lin, Wei-Cheng
Lo and Jenn-Kang Hwang* (2012, Feb). Evolutionary information
hidden in a single protein structure. Proteins: Structure,
Function, and Bioinformatics, doi:10.1002/prot.24058. |
|
|
|
 |
Drug Design and Systems Biology Laboratory, Department of Biological
Science and Technology, Institute of Bioinformatics and Systems
Biology, National Chiao Tung University
http://bioxgem.life.nctu.edu.tw/bioxgem/index.php#tab_professor
|
| Laboratory Specialization |
Bioinformatics, Computer-Aided Drug Design, and Systems Biology |
| Principal investigator |
Dr. Jinn-Moon Yang, Professor at the National Chiao Tung University
Department of Bioinformatics and Systems Biology. Previous positions
include the Chair of the Institute of Bioinformatics and Systems Biology
and an executive director of the Taiwan Bioinformatics and Systems
Biology Society. |
| Selected co-authored papers |
| Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang and Ping-Chiang
Lyu* (2007, Aug.). Protein structural similarity search by Ramachandran
codes. BMC Bioinformatics, 8:307. |
|
|
| Wei-Cheng Lo and Ping-Chiang Lyu* (2008, Jan.). CPSARST:
an efficient circular permutation search tool applied to the
detection of novel protein structural relationships. Genome
Biology, 9:R11. |
|
|
|
 |
Computational Systems Biology and Bio-Medicine Laboratory, Department
of Computer Science, National Tsing Hua University
http://www.cs.nthu.edu.tw/~cytang/
|
| Laboratory Specialization |
Algorithm Design, Distributed Computing, Process Control, and Computational
Biology |
| Principal investigator |
Dr. Chuan Yi Tang, Professor of National Tsing Hua University Department
of Computer Engineering, the President of Providence University. Previous
positions include the Chair of the Computer & Communication Center
and Deputy Director of the Office of the Registrar at National Tsing
Hua University. |
| Selected co-authored papers |
| Chia-Han Chu#, Wei-Cheng Lo#, Hsin-Wei Wang, Yen-Chu
Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai* and Chuan
Yi Tang* (2010, Sep.). Detection and alignment of 3D domain
swapping proteins using angle-distance image-based secondary
structural matching techniques. PLoS ONE, 5:e13361.
|
|
|
| Chi-Ching Lee#, Wei-Cheng Lo#, Szu-Ming Lai, Yi-Ping
Phoebe Chen, Chuan Yi Tang and Ping-Chiang Lyu* (2012, Apr).
Metabolic classification of microbial genomes using functional
probes. BMC Genomics, 13:157. |
|
|
|
 |
Bioinformatics Group, Department of Computer Science and Information
Technology, La Trobe University
http://homepage.cs.latrobe.edu.au/ypchen/
|
| Laboratory Specialization |
Disease Analysis and Diagnosis, Medical mage Analysis, Drug Design,
Intelligent Computation and Deep Learning |
| Principal investigator |
Dr. Yi-Ping Phoebe Chen, Professor and Department Chair at the Department
of Computer Science and Computer Engineering, School of Engineering
and Mathematical Sciences, La Trobe University, Melbourne Australia.
Previous positions include the Head of Department and the Chief Investigator
of ARC Centre of Excellence in Bioinformatics. |
| Selected co-authored papers |
| Chi-Ching Lee#, Wei-Cheng Lo#, Szu-Ming Lai, Yi-Ping
Phoebe Chen, Chuan Yi Tang and Ping-Chiang Lyu* (2012, Apr).
Metabolic classification of microbial genomes using functional
probes. BMC Genomics, 13:157. |
|
|
| Chi-Ching Lee, Yi-Ping Phoebe Chen, T.J. Yao, C.Y. Ma, Wei-Cheng
Lo, Ping-Chiang Lyu* and Chuan Yi Tang* (2013, Apr). GI-POP:
a combinational annotation and genomic island prediction pipeline
for ongoing microbial genome projects. Gene,
518(1):114-23. |
|
|
|
 |
Bio NMR Laboratory, Institute of Bioinformatics and Structural
Biology, National Tsing Hua University
https://sites.google.com/gapp.nthu.edu.tw/shihchesue
|
| Laboratory Specialization |
Structural Biology, Biochemistry, NMR Spectroscopy, and Proteomics |
| Principal investigator |
Dr. Shih-Che Sue, Professor at the Institute of Bioinformatics and
Structural Biology, National Tsing Hua University. |
| Selected co-authored papers |
| Yun-Tzai Lee, Tz-Hsiang Su, Wei-Cheng Lo, Ping-Chiang
Lyu* and Shih-Che Sue* (2012, Aug). Circular permutation prediction
reveals a viable backbone disconnection for split proteins:
An approach in identifying a new functional split intein. PLoS
ONE, e43820. |
|
|
| Yi-Lin Hung, Hsia-Ju Lee, Ingjye Jiang, Shang-Chi Lin, Wei-Cheng
Lo, Yi-Jan Lin and Shih-Che Sue* (2015, Jul). The first
residue of the PWWP motif modulates HATH domain binding, stability,
and protein-protein interaction. Biochemistry,
5b00454. |
|
|
|
 |
Computer Vision Laboratory, Department of Computer Engineering,
National Taiwan Ocean University
http://www.cs.ntou.edu.tw/cswp/index.php?name=people1-a&sid=4
|
| Laboratory Specialization |
Image Analysis, Machine Learning, and Bioinformatics |
| Principal investigator |
Dr. Tun-Wen Pai, Professor in the Department Computer Engineering,
National Taiwan Ocean University. Previous positions include an associate
researcher at the Ministry of Transportation and Communication Chunghwa
Telecom Institute of Applied Technology. |
| Selected co-authored papers |
| Chia-Han Chu#, Wei-Cheng Lo#, Hsin-Wei Wang, Yen-Chu
Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai* and Chuan
Yi Tang* (2010, Sep.). Detection and alignment of 3D domain
swapping proteins using angle-distance image-based secondary
structural matching techniques. PLoS ONE, 5:e13361.
|
|
|
| Wei-Cheng Lo#, Tian Dai#, Yen-Yi Liu, Li-Fen Wang,
Jenn-Kang Hwang* and Ping-Chiang Lyu* (2012, Feb). Deciphering
the preference and predicting the viability of circular permutations
in proteins. PLoS ONE, 7:e31791. |
|
|
|
 |
Bioinformatics Laboratory, Graduate Institute of Biomedical Sciences,
China Medical University
http://webap.cmu.edu.tw/TchEportfolio/index_1/chlu
|
| Laboratory Specialization |
Computational Molecular Biology, Structural Bioinformatics, and
Drug Screening |
| Principal investigator |
Dr. Chih-Hao Lu, Associate Professor at the Graduate Institute of
Biomedical Sciences, China Medical University. |
| Selected co-authored papers |
| Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang and Ping-Chiang
Lyu* (2007, Aug.). Protein structural similarity search by Ramachandran
codes. BMC Bioinformatics, 8:307. |
|
|
| Wei-Cheng Lo and Ping-Chiang Lyu* (2008, Jan.). CPSARST:
an efficient circular permutation search tool applied to the
detection of novel protein structural relationships. Genome
Biology, 9:R11. |
|
|
|
 |
Computational Biology Laboratory, Institute of Medical Science
and Technology, National Sun Yat-sen University
https://sites.google.com/site/cenesischen/home
|
| Laboratory Specialization |
Structural Bioinformatics, Protein Structure Prediction, Folding
Identification, Postgenomic Analysis, Molecular Dynamics, and Molecular
Connections |
| Principal investigator |
Dr. Chih-Chieh Chen, Assistant Professor at the Institute of Medical
Science and Technology. |
| Selected co-authored papers |
| Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang and Ping-Chiang
Lyu* (2007, Aug.). Protein structural similarity search by Ramachandran
codes. BMC Bioinformatics, 8:307. |
|
|
| Wei-Cheng Lo and Ping-Chiang Lyu* (2008, Jan.). CPSARST:
an efficient circular permutation search tool applied to the
detection of novel protein structural relationships. Genome
Biology, 9:R11. |
|
|
|